Publications

2017

Bib Link

Stefan Coassin, Gertraud Erhart, Hansi Weißensteiner, Mariana Eca Guimaraes de Araujo, Claudia Lamina, Sebastian Schönherr, Lukas Forer, Margot Haun, Jamie Lee Losso, Anna Köttgen, Gerd Uterman, Annette Peters, Christian Gieger, Konstantin Strauch, Armin Finkenstedt, Reto Bale, Heinz Zoller, Bernhard Paulweber, Kai-Uwe Eckardt, Alexander Hüttenhofer, Lukas Huber and Florian Kronenberg: A novel but frequent variant in LPA KIV-2 is associated with a pronounced Lp(a) and cardiovascular risk reduction. In European Heart Journal - in press. Wiley Online Library, 2017

2016

Bib

Lukas Forer, Enis Afgan, Hansi Weißensteiner, Davor Davidovic, Günther Specht, Florian Kronenberg and Sebastian Schönherr: Cloudflow-Enabling Faster Biomedical Pipelines with MapReduce and Spark. In Scalable Computing: Practice and Experience, vol. 17, no. 2, pages 103-114. 2016

Bib Link

Hansi Weißensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas and Sebastian Schönherr: HaploGrep 2: Mitochondrial Haplogroup Classification in the Era of High-Throughput Sequencing. In Nucleic Acids Research, vol. 44, no. W1, pages W58-W63. 2016

Bib Link

Hansi Weißensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg and Sebastian Schönherr: mtDNA-Server: Next-Generation Sequencing Data Analysis of Human Mitochondrial DNA in the Cloud. In Nucleic Acids Research, vol. 44, no. W1, pages W64-W69. 2016

2015

Bib Link

Lukas Forer, Enis Afgan, Hansi Weißensteiner, Davor Davidović, Günther Specht, Florian Kronenberg and Sebastian Schönherr: Cloudflow - A Framework for MapReduce Pipeline Development in Biomedical Research. In 2015 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), pages 172-177. 2015

Bib

Julia Raschenberger, Barbara Kollerits, Stephanie Titze, Anna Köttgen, Barbara Bärthlein, Arif Ekici, Lukas Forer, Sebastian Schönherr, Hansi Weißensteiner, Margot Haun, Christoph Wanner, Kai-Uwe Eckardt and Florian Kronenberg: Do Telomeres have a Higher Plasticity than thought? Results from the German Chronic Kidney Disease (GCKD) Study as a High-Risk Population. In Experimental Gerontology, Vol. 72, pages 162-166. Pergamon, 2015

Bib

Anita Kloss-Brandstätter, Hansi Weißensteiner, Gertraud Erhart, Georg Schäfer, Lukas Forer, Sebastian Schönherr, Dominic Pacher, Christof Seifarth, Andrea Stöckl, Liane Fendt, Irma Sottsas, Helmut Klocker, Christian Huck, Michael Rasse, Florian Kronenberg and Frank Kloss: Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma. In PloS one, vol. 10, no. 8, pages e0135643. Public Library of Science, 2015

Bib

Julia Raschenberger, Barbara Kollerits, Stephanie Titze, Anna Koettgen, Barbara Baerthlein, Arif Ekici, Lukas Forer, Sebastian Schönherr, Hansi Weißensteiner, Margot Haun, Christoph Wanner, Kai-Uwe Eckardt and Florian Kronenberg: Association of Relative Telomere Length with Cardiovascular Disease in a Large Chronic Kidney Disease Cohort: The GCKD Study. In Atherosclerosis, vol. 242, no. 2, pages 529-534. Elsevier, 2015

2014

Bib Link

Sebastian Schönherr: Processing of Massive Datasets in Genomics. PhD thesis, University of Innsbruck, Department of Computer Science, 2014.

Bib

Lukas Forer, Tomislav Lipic, Sebastian Schönherr, Hansi Weißensteiner, Davor Davidovic, Florian Kronenberg and Enis Afgan: Delivering Bioinformatics MapReduce Applications in the Cloud. In Proceedings of the 37th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO 2014), pages 373-377. 2014

Bib

Monika Summerer, Jürgen Horst, Gertraud Erhart, Hansi Weißensteiner, Sebastian Schönherr, Dominic Pacher, Lukas Forer, David Horst, Angelika Manhart, Basil Horst, Torpong Sanguansermsri and Anita Kloss-Brandstätter: Large-Scale Mitochondrial DNA Analysis in Southeast Asia Reveals Evolutionary Effects of Cultural Isolation in the Multi-Ethnic Population of Myanmar. In BMC Evolutionary Biology, vol. 14, no. 1, pages 17. BioMed Central, 2014

2013

Bib Link

Hansi Weißensteiner, Margot Haun, Sebastian Schönherr, Mathias Neuner, Lukas Forer, Günther Specht, Anita Kloss-Brandstätter, Florian Kronenberg, Stefan Coassin: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays. In PLOS ONE, vol. 8, no. 3, pages 1-9. Public Library of Science, 2013

2012

Bib

Lukas Forer, Sebastian Schönherr, Hansi Weißensteiner, Günther Specht, Florian Kronenberg and Anita Kloss-Brandstätter: Cloud Computing - Bringing Computational Power to Medical Genetics. In Zlatko Trajanoski (Ed.): Computational Medicine: Tools and Challenges, 203 p., Springer 2012, ISBN: 978-3-7091-0946-5, pp. 27-36

Bib Link

Claudia Lamina, Lukas Forer, Sebastian Schönherr, Barbara Kollerits, Janina Ried, Christian Gieger, Annette Peters, Heinz-Erich Wichmann and Florian Kronenberg: Evaluation of Gene-Obesity Interaction Effects on Cholesterol Levels: A Genetic Predisposition Score on HDL-Cholesterol is Modified by Obesity . In Atherosclerosis , vol. 225, no. 2, pages 363 - 369. 2012

Bib Link

Sebastian Schönherr, Lukas Forer, Hansi Weißensteiner, Florian Kronenberg, Günther Specht and Anita Kloss-Brandstätter: Cloudgene: A Graphical Execution Platform for MapReduce Programs on Private and Public Clouds. In BMC Bioinformatics, vol. 13, no. 1, pages 200. 2012

2011

Bib

Sebastian Schönherr, Lukas Forer, Hansi Weißensteiner, Florian Kronenberg, Günther Specht and Anita Kloss-Brandstätter: A Feedback Guided Interface for Elastic Computing. In Proceedings of the 23rd GI-Workshop Grundlagen von Datenbanken (GvDB 2011), Obergurgl, Austria, pages 109-114. 2011

Bib Link

Anita Kloss-Brandstätter, Dominic Pacher, Sebastian Schönherr, Hansi Weißensteiner, Robert Binna, Günther Specht and Florian Kronenberg: HaploGrep: A Fast and Reliable Algorithm for Automatic Classification of Mitochondrial DNA Haplogroups. In Human Mutation, vol. 32, no. 1, pages 25-32. Wiley Inc., 2011

2010

Bib Link

Lukas Forer, Sebastian Schönherr, Hansi Weißensteiner, Florian Haider, Thomas Kluckner, Christian Gieger, Heinz-Erich Wichmann, Günther Specht, Florian Kronenberg and Anita Kloss-Brandstätter: CONAN: Copy Number Variation Analysis Software for Genome-wide Association Studies. In BMC Bioinformatics, vol. 11, no. 1, pages 318. 2010

Bib Link

Hansi Weißensteiner, Sebastian Schönherr, Günther Specht, Florian Kronenberg and Anita Brandstätter: eCOMPAGT integrates mtDNA: Import, Validation and Export of Mitochondrial DNA Profiles for Population Genetics, Tumour Dynamics and Genotype-Phenotype Association Studies. In BMC Bioinformatics, vol. 11, no. 1, pages 122. 2010

2009

Bib Link

Sebastian Schönherr, Hansi Weißensteiner, Stefan Coassin, Günther Specht, Florian Kronenberg and Anita Brandstätter: eCOMPAGT - efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology. In BMC Bioinformatics, vol. 10, no. 1, pages 139. 2009