Publications

@INPROCEEDINGS{7160259,
author={L. Forer and E. Afgan and H. Weißensteiner and D. Davidović and G. Specht and F. Kronenberg and S. Schönherr},
booktitle={2015 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)},
title={Cloudflow - A framework for MapReduce pipeline development in Biomedical Research},
year={2015},
pages={172-177},
abstract={The data-driven parallelization framework Hadoop MapReduce allows analysing large data sets in a scalable way. Since the development of MapReduce programs can be a time-intensive and challenging task, the application and usage of Hadoop in Biomedical Research is still limited. Here we present Cloudflow, a high-level framework to hide the implementation details of Hadoop and to provide a set of building blocks to create biomedical pipelines in a more intuitive way. We demonstrate the benefit of Cloudflow on three different genetic use cases. It will be shown how the framework can be combined with the Hadoop workflow system Cloudgene and the cloud orchestration platform CloudMan to provide Hadoop pipelines as a service to everyone.},
keywords={cloud computing;data handling;medical computing;parallel processing;CloudMan;Cloudflow;Cloudgene;Hadoop MapReduce;biomedical research;cloud orchestration platform;data-driven parallelization framework;genetic use cases;high-level framework;pipeline development;workflow system;Bioinformatics;Genomics;Information filters;Pipeline processing;Pipelines},
doi={10.1109/MIPRO.2015.7160259},
month={May},}

@INCOLLECTION {tschuggnall2015-gid15,
    author    = "Michael Tschuggnall",
    title     = "{Intrinsische Plagiatserkennung und Autorenerkennung mittels Grammatikanalyse}",
    booktitle = "Ausgezeichnete Informatikdissertationen 2014",
    publisher = "Bonner K{\"o}llen Druck+Verlag",
    year      = "2015",
    editor    = "Steffen H{\"o}lldobler",
    volume    = "D-15",
    series    = "GI-Edition – Lecture Notes in Informatics (LNI)",
    pages     = "279-288"
}

@inProceedings{opensym15,
author = {Zangerle, Eva and Schmidhammer, Georg and Specht, G\"{u}nther},
title = {#Wikipedia on Twitter: Analyzing Tweets About Wikipedia},
booktitle = {Proceedings of the 11th International Symposium on Open Collaboration},
series = {OpenSym '15},
year = {2015},
isbn = {978-1-4503-3666-6},
location = {San Francisco, California},
pages = {14:1--14:8},
articleno = {14},
numpages = {8},
url = {http://doi.acm.org/10.1145/2788993.2789845},
doi = {10.1145/2788993.2789845},
acmid = {2789845},
publisher = {ACM},
month = apr,
address = {New York, NY, USA},
keywords = {Twitter, Wikipedia, quantitative study},
}

@book{mysql,
author = {Proell, Stefan and Zangerle, Eva and Gassler, Wolfgang},
title = {MySQL 5.6 - Das umfassende Handbuch},
publisher = {Galileo Computing},
edition = {3rd},
year = {2015},
}

@article{kehdy2015origin,
  title={Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations},
  author={Kehdy, Fernanda SG and Gouveia, Mateus H and Machado, Moara and Magalh{\~a}es, Wagner CS and Horimoto, Andrea R and Horta, Bernardo L and Moreira, Rennan G and Leal, Thiago P and Scliar, Marilia O and Soares-Souza, Giordano B and others},
  journal={Proceedings of the National Academy of Sciences},
  volume={112},
  number={28},
  pages={8696--8701},
  year={2015},
  publisher={National Acad Sciences}
}

@article{raschenberger2015association,
  title={Association of relative telomere length with cardiovascular disease in a large chronic kidney disease cohort: the GCKD study},
author = {Raschenberger, Julia and Kollerits, Barbara and Titze, Stephanie and {Koettgen}, Anna K and Baerthlein, Barbara B  and Ekici, Arif B and Forer, Lukas and Sch, Sebastian and Sch\"onherr, and Weissensteiner, Hansi and Haun, Margot and Wanner, Christoph and Eckardt, Kai-Uwe and Kronenberg, Florian},
  journal={Atherosclerosis},
  volume={242},
  number={2},
  pages={529--534},
  year={2015},
  publisher={Elsevier}
}

@article{kloss2015validation,
  title={Validation of next-generation sequencing of entire mitochondrial genomes and the diversity of mitochondrial DNA mutations in oral squamous cell carcinoma},
 author = {Kloss-Brandst{\"{a}}tter, Anita and Weissensteiner, Hansi and Erhart, Gertraud and Sch{\"{a}}fer, Georg and Forer, Lukas and Sch{\"{o}}nherr, Sebastian and Pacher, Dominic and Seifarth, Christof and St{\"{o}}ckl, Andrea and Fendt, Liane and Sottsas, Irma and Klocker, Helmut and Huck, Christian W. and Rasse, Michael and Kronenberg, Florian and Kloss, Frank R.},
  journal={PloS one},
  volume={10},
  number={8},
  pages={e0135643},
  year={2015},
  publisher={Public Library of Science}
}

@article{raschenberger2015telomeres,
  title={Do telomeres have a higher plasticity than thought? Results from the German Chronic Kidney Disease (GCKD) study as a high-risk population},
 author = {Raschenberger, Julia and Kollerits, Barbara and Titze, Stephanie and K{\"{o}}ttgen, Anna and B{\"{a}}rthlein, Barbara and Ekici, Arif B. and Forer, Lukas and Sch{\"{o}}nherr, Sebastian and Weissensteiner, Hansi and Haun, Margot and Wanner, Christoph and Eckardt, Kai-Uwe and Kronenberg, Florian},
  journal={Experimental gerontology},
  volume={72},
  pages={162--166},
  year={2015},
  publisher={Pergamon}
}

@PHDTHESIS {tschuggnall2014-diss,
    author = {Michael Tschuggnall},
    title  = {{Intrinsic Plagiarism Detection and Author Analysis By Utilizing Grammar}},
    school = {University of Innsbruck, Department of Computer Science},
    year   = {2014},
    month  = {dec}
}

@PHDTHESIS {pacher2014-diss,
    author = {Dominic Pacher},
    title  = {{Spatially aware graph stores}},
    school = {University of Innsbruck, Department of Computer Science},
    year   = {2014},
    month  = {nov}
}

@inproceedings{krismer2014incremental,
  title={Incremental Calculation of Isochrones Regarding Duration.},
  author={Krismer, Nikolaus and Specht, G{\"u}nther and Gamper, Johann},
  booktitle={Grundlagen von Datenbanken},
  pages={41--46},
  year={2014},
  month={10}
}

@inproceedings{gvdb14,
author = {Pichl, Martin and Zangerle, Eva and Specht, G\"unther},
booktitle = {Proceedings of the 26nd Workshop Grundlagen von Datenbanken (GvDB 2014), Ritten, Italy},
publisher = {CEUR-WS.org},
title = {{Combining Spotify and Twitter Data for Generating a Recent and Public Dataset for Music Recommendation}},
year = {2014},
volume = {1313},
month = oct,
pages = {35--40},
howpublished = {online},
}

@PHDTHESIS {forer2014-diss,
    author = {Lukas Forer},
    title  = {{A MapReduce workflow system for high-throughput detection and analysis of genetic variations}},
    school = {University of Innsbruck, Department of Computer Science},
    year   = {2014},
    month  = {oct}
}

@inproceedings{tschuggnall2014automatic,
	Address = {Bozen, Italy},
	Author = {Michael Tschuggnall and G{\"u}nther Specht},
	Booktitle = {Proceedings of the 26th GI-Workshop on Grundlagen von Datenbanken},
	Date-Added = {2014-09-15 09:58:01 +0000},
	Date-Modified = {2014-09-16 08:06:11 +0000},
	Month = {October},
	Publisher = {CEUR-WS},
	Title = {Automatic Decomposition of Multi-Author Documents Using Grammar Analysis},
	Year = {2014}}

@Inbook{Binna2015,
author="Binna, Robert
and Pacher, Dominic
and Meindl, Thomas
and Specht, G{\"u}nther",
editor="Jagatheesan, Arun
and Levandoski, Justin
and Neumann, Thomas
and Pavlo, Andrew",
title="The DCB-Tree: A Space-Efficient Delta Coded Cache Conscious B-Tree",
bookTitle="In Memory Data Management and Analysis: First and Second International Workshops, IMDM 2013, Riva del Garda, Italy, August 26, 2013, IMDM 2014, Hongzhou, China, September 1, 2014, Revised Selected Papers",
year="2015",
publisher="Springer International Publishing",
address="Cham",
pages="126--138",
isbn="978-3-319-13960-9",
doi="10.1007/978-3-319-13960-9_10",
url="http://dx.doi.org/10.1007/978-3-319-13960-9_10"
}

@inproceedings{tschuggnall2014grammar,
	Address = {Paris, France},
	Author = {Tschuggnall, Michael and Specht, G{\"u}nther},
	Booktitle = {Proceedings of the 4th International Conference on Advances in Information Mining and Management (IMMM)},
	Date-Modified = {2014-08-21 13:10:55 +0000},
	Month = {July},
	Pages = {30--35},
	Title = {What Grammar Tells About Gender and Age of Authors},
	Year = {2014}}

@InProceedings{ismm14,
title={#nowplaying Music Dataset: Extracting Listening Behavior from Twitter},
author={Zangerle, Eva and Pichl, Martin and Gassler, Wolfgang and Specht, G\"unther},
year={2014},
pages={21--26},
location = {Orlando, Florida, USA},
publisher = {ACM},
address = {New York, NY, USA},
month = jun,
booktitle = {Proceedings of the 1st ACM International Workshop on Internet-Scale Multimedia Management},
series = {ISMM '14},
}

@PHDTHESIS {schoenherr2014-diss,
    author = {Sebastian Sch\"{o}nherr},
    title  = {{Processing of massive datasets in genomics}},
    school = {University of Innsbruck, Department of Computer Science},
    year   = {2014},
    month  = {may}
}

@article{fgcs,
author = {Gassler, Wolfgang and Zangerle, Eva and Specht, G\"unter},
title = {{Guided Curation of Semistructured Data in Collaboratively-built Knowledge Bases}},
journal = {Journal on Future Generation Computer Systems},
publisher = {Elsevier Science Publishers},
year = {2014},
note = {impact factor 1.978.},
url = {http://www.sciencedirect.com/science/article/pii/S0167739X13001076},
pages = {111-119},
volume = {31},
month = may,
doi = {10.1016/j.future.2013.05.008},
}

@inproceedings{tschuggnall-specht:2014:EACL2014-SP,
	Address = {Gothenburg, Sweden},
	Author = {Tschuggnall, Michael and Specht, G\"{u}nther},
	Booktitle = {Proceedings of the 14th Conference of the European Chapter of the Association for Computational Linguistics (EACL), volume 2: Short Papers},
	Month = {April},
	Pages = {195--199},
	Publisher = {Association for Computational Linguistics},
	Title = {Enhancing Authorship Attribution By Utilizing Syntax Tree Profiles},
	Url = {http://www.aclweb.org/anthology/E14-4038},
	Year = {2014},
	Bdsk-Url-1 = {http://www.aclweb.org/anthology/E14-4038}}

@inproceedings{sac14,
author = {Zangerle, Eva and Specht, G\"unther},
title = {{“Sorry, I was hacked"---A Classification of Compromised Twitter Accounts}},
publisher = {ACM},
year = {2014},
booktitle = {Proceedings of the 29th ACM Symposium on Applied Computing},
address = {Gyeongju, Korea},
month = mar,
pages = {587--593}
}

@incollection{iup_twitter_miscreants2014,
editor = {Ortner, Heike and Pfurtscheller, Daniel and Rizzoli, Michaela and Wiesinger, Andreas},
author = {Zangerle, Eva},
title = {Missbrauch und Betrug auf Twitter},
booktitle = {Datenflut und Informationskan\"ale},
year = {2014},
pages = {167--176},
publisher = {Innsbruck University Press}
}

@article{summerer2014large,
  title={Large-scale mitochondrial DNA analysis in Southeast Asia reveals evolutionary effects of cultural isolation in the multi-ethnic population of Myanmar},
 author = {Summerer, Monika and Horst, J{\"{u}}rgen and Erhart, Gertraud and Weissensteiner, Hansi and Sch{\"{o}}nherr, Sebastian and Pacher, Dominic and Forer, Lukas and Horst, David and Manhart, Angelika and Horst, Basil and Sanguansermsri, Torpong and Kloss-Brandst{\"{a}}tter, Anita},
  journal={BMC evolutionary biology},
  volume={14},
  number={1},
  pages={17},
  year={2014},
  publisher={BioMed Central}
}

@InProceedings{cybercrime14,
author={Zangerle, Eva and Specht, G\"unther},
title = {{Cybercrime on Twitter: Shifting the User Back into Focus}},
year = {2014},
booktitle = {Proceedings of the WebScience Cybercrime / Cyberwar Workshop, co-located with WebSci14},
}

@inproceedings{forer2014delivering,
  title={Delivering bioinformatics mapreduce applications in the cloud},
  author={Forer, Lukas and Lipic, Tomislav and Schonherr, Sebastian and Weissensteiner, Hansi and Davidovic, Davor and Kronenberg, Florian and Afgan, Enis},
  booktitle={Information and Communication Technology, Electronics and Microelectronics (MIPRO), 2014 37th International Convention on},
  pages={373--377},
  year={2014},
  organization={IEEE}
}