Publications

@PHDTHESIS {borovicka2011-diss,
    author = {Michael Borovicka},
    title  = {{A Framework for a Fully Archetyped and Harmonised Electronic Health Record Data Cycle Enabling Provision of Integrated Medical Care}},
    school = {University of Innsbruck, Department of Computer Science},
    year   = {2011},
    month  = {sep}
}

@proceedings{DBLP:conf/gvd/2011,
  editor       = {Wolfgang Gassler and
                  Eva Zangerle and
                  G{\"{u}}nther Specht},
  title        = {Proceedings of the 23rd GI-Workshop "Grundlagen von Datenbanken 2011",
                  Obergurgl, Austria, May 31 - June 03, 2011},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {733},
  publisher    = {CEUR-WS.org},
  year         = {2011},
  url          = {https://ceur-ws.org/Vol-733},
}

@inproceedings{cts11,
title = {{The Snoopy Concept: Fighting Heterogeneity in Semistructured and Collaborative Information Systems by using Recommendations}},
booktitle = {The 2011 International Conference on Collaboration Technologies and Systems (CTS 2011)},
year = {2011},
address = {Philadelphia, PE},
author = {Gassler, Wolfgang and Zangerle, Eva and Specht, G\"unther},
pages={61-68},
month = may,
doi = {10.1109/CTS.2011.5928666}
}

@article{jacquemont2011mirror,
  title={Mirror extreme BMI phenotypes associated with gene dosage at the chromosome 16p11. 2 locus},
  author={Jacquemont, S{\'e}bastien and Reymond, Alexandre and Zufferey, Flore and Harewood, Louise and Walters, Robin G and Kutalik, Zolt{\'a}n and Martinet, Danielle and Shen, Yiping and Valsesia, Armand and Beckmann, Noam D and others},
  journal={Nature},
  volume={478},
  number={7367},
  pages={97--102},
  year={2011},
  publisher={Nature Publishing Group}
}

@inproceedings{gvdb11,
author = {Binna, Robert and Gassler, Wolfgang and Zangerle, Eva and Pacher, Dominic and Specht, G\"unther},
booktitle = {Proceedings of the 23nd Workshop Grundlagen von Datenbanken (GvDB 2011), Obergurgl, Austria},
publisher = {CEUR-WS.org, ISSN 1613-0073, Vol. 733},
title = {{SpiderStore: A Native Main Memory Approach for Graph Storage}},
year = {2011},
howpublished = {online}
}

@MISC{ht11,
author = {Larcher, Alexander and Zangerle, Eva and Gassler, Wolfgang and Specht, G\"unther},
title = {Key Recommendations for Infoboxes in Wikipedia},
year = {2011},
howpublished = {Website of the 22nd ACM Conference on Hypertext and Hypermedia},
note = {Poster Presentation}
}

@misc{proll2011mysql,
  title={MySQL: Das Handbuch f{\"u}r Administratoren},
  author={Pr{\"o}ll, Stefan and Zangerle, Eva and Gassler, Wolfgang},
  year={2011},
  publisher={Galileo Computing}
}

@inproceedings{umap11,
author = {Zangerle, Eva and Gassler, Wolfgang and Specht, G\"unther},
title = {Recommending #-tags in Twitter},
booktitle = {Proceedings of the Workshop on Semantic Adaptive Social Web 2011 in connection with the 19th International Conference on User Modeling, Adaptation and Personalization, UMAP 2011},
address = {Gerona, Spain},
publisher = {CEUR-WS.org},
year = {2011},
pages = {67-78}
}

@inproceedings{schonherr2011feedback,
  title={A feedback guided interface for elastic computing.},
  author={Sch{\"o}nherr, Sebastian and Forer, Lukas and Wei{\ss}ensteiner, Hansi and Kronenberg, Florian and Specht, G{\"u}nther and Kloss-Brandst{\"a}tter, Anita},
  booktitle={Grundlagen von Datenbanken},
  pages={109--114},
  year={2011},
  organization={Citeseer}
}

@article {HUMU:HUMU21382,
author = {Kloss-Brandstätter, Anita and Pacher, Dominic and Schönherr, Sebastian and Weissensteiner, Hansi and Binna, Robert and Specht, Günther and Kronenberg, Florian},
title = {HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups},
journal = {Human Mutation},
volume = {32},
number = {1},
publisher = {Wiley Subscription Services, Inc., A Wiley Company},
issn = {1098-1004},
url = {http://dx.doi.org/10.1002/humu.21382},
doi = {10.1002/humu.21382},
pages = {25--32},
keywords = {mitochondrial DNA, haplogroup, Phylotree, quality assurance},
year = {2011},
}

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@inproceedings{pacher2011data,
  title={Data Locality in Graph Databases through N-Body Simulation.},
  author={Pacher, Dominic and Binna, Robert and Specht, G{\"u}nther},
  booktitle={Grundlagen von Datenbanken},
  pages={85--90},
  year={2011},
  organization={Citeseer}
}

@inproceedings{ht10,
author = {Gassler, Wolfgang and Zangerle, Eva and Tschuggnall, Michael and Specht, G{\"u}nther},
title = {{SnoopyDB: Narrowing the Gap between Structured and Unstructured Information using Recommendations}},
booktitle = {HT'10, Proceedings of the 21st ACM Conference on Hypertext and Hypermedia, Toronto, Ontario, Canada, June 13-16, 2010},
year = {2010},
pages = {271-272},
ee = {http://doi.acm.org/10.1145/1810617.1810670},
isbn = {978-1-4503-0041-4},
bibsource = {DBLP, http://dblp.uni-trier.de},
editor = {Mark H. Chignell and
Elaine Toms},
month=jun,
doi = {10.1145/1810617.1810670}
}

@inproceedings{gvdb10,
author = {Gassler, Wolfgang and Zangerle, Eva},
booktitle = {Proceedings of the 22nd Workshop Grundlagen von Datenbanken (GvDB 2010), Bad Helmstedt, Germany},
publisher = {CEUR-WS.org},
title = {{Recommendation-Based Evolvement of Dynamic Schemata in Semistructured Information Systems}},
year = {2010},
note = {},
howpublished = {online}
}

@inproceedings{recsys10,
author = {Zangerle, Eva and Gassler, Wolfgang and Specht, G\"{u}nther},
title = {{Recommending Structure in Collaborative Semistructured Information Systems}},
booktitle = {RecSys '10: Proceedings of the third ACM conference on Recommender systems},
year = {2010},
pages = {141-145},
location = {Barcelona, Spain},
publisher = {ACM},
address = {Barcelona, Spain},
doi = {10.1145/1864708.1864762}
}

@Article{Forer2010,
author="Forer, Lukas
and Sch{\"o}nherr, Sebastian
and Weissensteiner, Hansi
and Haider, Florian
and Kluckner, Thomas
and Gieger, Christian
and Wichmann, Heinz-Erich
and Specht, G{\"u}nther
and Kronenberg, Florian
and Kloss-Brandst{\"a}tter, Anita",
title="CONAN: copy number variation analysis software for genome-wide association studies",
journal="BMC Bioinformatics",
year="2010",
volume="11",
number="1",
pages="318",
abstract="Genome-wide association studies (GWAS) based on single nucleotide polymorphisms (SNPs) revolutionized our perception of the genetic regulation of complex traits and diseases. Copy number variations (CNVs) promise to shed additional light on the genetic basis of monogenic as well as complex diseases and phenotypes. Indeed, the number of detected associations between CNVs and certain phenotypes are constantly increasing. However, while several software packages support the determination of CNVs from SNP chip data, the downstream statistical inference of CNV-phenotype associations is still subject to complicated and inefficient in-house solutions, thus strongly limiting the performance of GWAS based on CNVs.",
issn="1471-2105",
doi="10.1186/1471-2105-11-318",
url="http://dx.doi.org/10.1186/1471-2105-11-318"
}

@inproceedings{Hackl:2010:SMM:1866480.1866481,
 author = {Hackl, G\"{u}nter and Pausch, Wolfgang and Sch\"{o}nherr, Sebastian and Specht, G\"{u}nther and Thiel, Gunther},
 title = {Synchronous Metadata Management of Large Storage Systems},
 booktitle = {Proceedings of the Fourteenth International Database Engineering \&\#38; Applications Symposium},
 series = {IDEAS '10},
 year = {2010},
 isbn = {978-1-60558-900-8},
 location = {Montreal, Quebec, Canada},
 pages = {1--6},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/1866480.1866481},
 doi = {10.1145/1866480.1866481},
 acmid = {1866481},
 publisher = {ACM},
 address = {New York, NY, USA},
} 

@Article{Weißensteiner2010,
author="Weißensteiner, Hansi
and Sch{\"o}nherr, Sebastian
and Specht, G{\"u}nther
and Kronenberg, Florian
and Brandst{\"a}tter, Anita",
title="eCOMPAGT integrates mtDNA: Import, Validation and Export of Mitochondrial DNA Profiles for Population Genetics, Tumour Dynamics and Genotype-Phenotype Association Studies",
journal="BMC Bioinformatics",
year="2010",
volume="11",
number="1",
pages="122",
abstract="Mitochondrial DNA (mtDNA) is widely being used for population genetics, forensic DNA fingerprinting and clinical disease association studies. The recent past has uncovered severe problems with mtDNA genotyping, not only due to the genotyping method itself, but mainly to the post-lab transcription, storage and report of mtDNA genotypes.",
issn="1471-2105",
doi="10.1186/1471-2105-11-122",
url="http://dx.doi.org/10.1186/1471-2105-11-122"
}

@MISC{M_chaosor,
    author = {Borovicka M and Laschitz L and Reiter D and Gächter E and Specht G},
    title = {Chaos or Content: Towards Generic Structuring of Medical Documents by Utilisation of Archetype-Classes},
    year = {2010}
}

@inproceedings{vldb10,
title={{SpiderStore: Exploiting Main Memory for Efficient RDF Graph Representation and Fast Querying}},
booktitle = {Proceedings of the 1st International Workshop on Semantic Data Management (SemData) at the 36th International Conference on Very Large Data Bases (VLDB 2010), Singapore},
author={Binna, Robert and Gassler, Wolfgang and Zangerle, Eva and Pacher, Dominic and Günther Specht},
year={2010},
publisher = {CEUR-WS.org},
howpublished = {online}
}

@Article{Schönherr2009,
author="Sch{\"o}nherr, Sebastian
and Wei{\ss}ensteiner, Hansi
and Coassin, Stefan
and Specht, G{\"u}nther
and Kronenberg, Florian
and Brandst{\"a}tter, Anita",
title="eCOMPAGT -- efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology",
journal="BMC Bioinformatics",
year="2009",
volume="10",
number="1",
pages="139",
abstract="High-throughput genotyping and phenotyping projects of large epidemiological study populations require sophisticated laboratory information management systems. Most epidemiological studies include subject-related personal information, which needs to be handled with care by following data privacy protection guidelines. In addition, genotyping core facilities handling cooperative projects require a straightforward solution to monitor the status and financial resources of the different projects.",
issn="1471-2105",
doi="10.1186/1471-2105-10-139",
url="http://dx.doi.org/10.1186/1471-2105-10-139"
}

@inproceedings{borovicka2009towards,
  title={Towards a Context-Oriented Dynamic Medical Information System Supporting the Differential Diagnosis Process},
  author={Borovicka, Michael},
  year={2009},
  publisher={Hansen, H. et al.},
  booktitle={Business Services: Konzepte, Technologien, Anwendungen; 9. Internationalen Tagung Wirtschaftsinformatik}
}

@article{DBLP:journals/jmm/VogtWRS08,
  author    = {Christian Vogt and
               Robert Walter and
               J{\"{o}}rg Rasinger and
               G{\"{u}}nther Specht},
  title     = {{INFOAREA} - an Open Multi-Purpose Information System for the Mobile
               Age},
  journal   = {J. Mobile Multimedia},
  volume    = {4},
  number    = {2},
  pages     = {139--148},
  year      = {2008},
  url       = {http://www.rintonpress.com/journals/jmm/abstractsJmm4-2.html},
  timestamp = {Thu, 27 May 2010 09:49:57 +0200},
  biburl    = {http://dblp2.uni-trier.de/rec/bib/journals/jmm/VogtWRS08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@misc{borovicka2008medical,
  title={Medical relevance in context to information synthesis},
  author={Borovicka, Michael},
  journal={eHealth2008—Medical Informatics Meets eHealth. Tagungsband der eHealth2008},
  pages={139--145},
  year={2008},
}

@inproceedings{DBLP:conf/ewcbr/Borovicka08,
  author    = {Michael C. A. Borovicka},
  title     = {Identifying Relevance Factors for Information Retrieval of a Dynamic
               Medical Information System supporting the Differential Diagnosis Process},
  booktitle = {{ECCBR} 2008, The 9th European Conference on Case-Based Reasoning,
               Trier, Germany, September 1-4, 2008, Workshop Proceedings},
  pages     = {13--22},
  year      = {2008},
  crossref  = {DBLP:conf/ewcbr/2008w},
  timestamp = {Wed, 13 Aug 2008 13:16:55 +0200},
  publisher={Schaaf, Matrin (Ed)},
}

@inproceedings{borovicka2008dmis,
  title={Introducing Relevance and Context to Information Retrieval Supporting the Differential Diagnosis Process},
  author={Borovicka, Michael and Stockdale, Rosemary},
  booktitle={13th International Symposium for Health Information Management Research (ISHIMR 2008)},
  year={2008},
}